/home/r01ken0/Code_Saturne/v2.0.5/cs-2.0/bin/cs_preprocess --in ecs_cmd -m 
/home/r01ken0/simulations/basic_annulus/MESH/test_w2.cgns --ensight --case 
check_mesh 

  .------------------------------.
  |                              |
  |   Code_Saturne Preprocessor  |
  |                              |
  `------------------------------'

  ECS   version 2.0.2   (Wed 28 Mar 2012 16:58:43 BST)

  CGNS 3.1.3 file format support
  MED 3.0.4 (HDF5 1.8.8) file format support
  Reading of compressed files ('.gz') with Zlib 1.2.3.4



Case configuration
------------------

  Date                : Wed 04 Apr 2012 14:02:04 BST
  System              : Linux 2.6.38-13-generic
  Machine             : cops-021076
  Processor           : Intel(R) Xeon(R) CPU           E5504  @ 2.00GHz
  Memory              : 12325656
  User                : r01ken0 (Kristin Newlands)
  Directory           : /home/r01ken0/simulations/basic_annulus/LES_SMAG/RESU

  Case name           : check_mesh
  Mesh file           : /home/r01ken0/simulations/basic_annulus/MESH/test_w2.cgns



Reading mesh from file in CGNS format
----------------------
  Mesh file: /home/r01ken0/simulations/basic_annulus/MESH/test_w2.cgns


  CGNS version       : 2.5
  Base name          : Base
  Physical dimension : 3
  Cell dimension     : 3
  Number of zones    : 1

    Zone 1: "Zone"; type "Unstructured"

      8736 vertices; 7000 cells
      (cartesian coordinates, "RealDouble" precision, unit "Null")
      Section  1: "fluid";
                   (indices 1 to 7000, type "HEXA_8")
      Section  2: "inlet";
                   (indices 7001 to 7280, type "QUAD_4")
      Section  3: "inner_wall";
                   (indices 7281 to 8680, type "QUAD_4")
      Section  4: "outer_wall";
                   (indices 8681 to 10080, type "QUAD_4")
      Section  5: "outlet";
                   (indices 10081 to 10360, type "QUAD_4")

  CGNS boundary condition information:

    Zone 1
      BC  1: "inlet" ("Null" on "FaceCenter")
      BC  2: "inner_wall" ("Null" on "FaceCenter")
      BC  3: "outer_wall" ("Null" on "FaceCenter")
      BC  4: "outlet" ("Null" on "FaceCenter")

  Number of vertices                          :     8736
  Number of faces                             :     3360
  Number of cells                             :     7000
  Group "inlet"
    Number of faces    :      280
  Group "inner_wall"
    Number of faces    :     1400
  Group "outer_wall"
    Number of faces    :     1400
  Group "outlet"
    Number of faces    :      280

  Wall-clock time: 0.006357 s; CPU time: 0.000000 s


Done reading mesh
-----------------
  Theoretical mesh size:               489.680 Kb
  Theoretical current memory:          489.000 Kb
  Theoretical peak memory:               1.100 Mb
  Total memory used:                    54.750 Mb

  Domain coordinate extents:

  [-2.50000e-02, -2.50000e-02,  0.00000e+00]
  [ 2.50000e-02,  2.50000e-02,  7.50000e-02]

  Number of elements                    quad4 :     3360
  Number of elements                    hexa8 :     7000


  Element orientation check.



EnSight output of mesh: Fluid Domain
-----------------------
  Creating file: check_mesh.ensight/CHR.case
  Creating file: check_mesh.ensight/chr.geo

End of conversion to descending connectivity
--------------------------------------------
  Theoretical mesh size:               825.465 Kb
  Theoretical current memory:          826.000 Kb
  Theoretical peak memory:               1.965 Mb
  Total memory used:                    56.008 Mb


Defining families
-----------------


Creating mesh for output: Boundary
-------------------------

  Number of elements                    quad4 :     3360


EnSight output of mesh: Boundary
-----------------------


Main mesh properties
--------------------

  Number of cells:                                  7000
  Number of internal faces:                        19320
  Number of boundary faces:                         3360
  Number of vertices:                               8736


Definition of face and cell families
------------------------------------

19320 faces from a total of 22680 have no color
and belong to no group...
A default family is assigned to those faces.


Warning
=======
7000 cells from a total of 7000 have no color
and belong to no group...
A default family is assigned to those cells.

  Family 1
         Group "inlet"
  Number of boundary faces :      280
  Family 2
         Group "inner_wall"
  Number of boundary faces :     1400
  Family 3
         Group "outer_wall"
  Number of boundary faces :     1400
  Family 4
         Group "outlet"
  Number of boundary faces :      280
  Family 5
         Default family
         (with no color nor group)
  Number of cells          :     7000
  Number of internal faces :    19320


Definition of colors and groups based on families
-------------------------------------------------

  Group "inlet"
        Family 1
  Group "inner_wall"
        Family 2
  Group "outer_wall"
        Family 3
  Group "outlet"
        Family 4


Groups numbering
----------------

  Group   1 : "inlet"
  Group   2 : "inner_wall"
  Group   3 : "outer_wall"
  Group   4 : "outlet"


Write output for Kernel
-----------------------

  Opening file: preprocessor_output

  Wrote: "start_block:dimensions"
  Wrote: "n_cells"                         ; Type: "u8"; Size: 1
  Wrote: "n_faces"                         ; Type: "u8"; Size: 1
  Wrote: "n_vertices"                      ; Type: "u8"; Size: 1
  Wrote: "face_vertices_size"              ; Type: "u8"; Size: 1
  Wrote: "n_group_classes"                 ; Type: "i4"; Size: 1
  Wrote: "n_group_class_props_max"         ; Type: "i4"; Size: 1
  Wrote: "n_groups"                        ; Type: "u8"; Size: 1
  Wrote: "group_name_index"                ; Type: "i4"; Size: 5
  Wrote: "group_name"                      ; Type: "c "; Size: 35
  Wrote: "group_class_properties"          ; Type: "i4"; Size: 5
  Wrote: "end_block:dimensions"
  Wrote: "start_block:data"
  Wrote: "face_cells"                      ; Type: "i4"; Size: 45360
  Wrote: "cell_group_class_id"             ; Type: "i4"; Size: 7000
  Wrote: "face_group_class_id"             ; Type: "i4"; Size: 22680
  Wrote: "face_vertices_index"             ; Type: "u4"; Size: 22681
  Wrote: "face_vertices"                   ; Type: "i4"; Size: 90720
  Wrote: "vertex_coords"                   ; Type: "r8"; Size: 26208
  Wrote: "end_block:data"
  Wrote: "EOF"

  Closing file: preprocessor_output


Time and memory summary
-----------------------

  User CPU time                       (sec)   :        0.09
  System CPU time                     (sec)   :        0.00
  Total time                          (sec)   :        0.09
  Total CPU time / Total time                 :        1.00

Memory use summary:

  Total memory used:                                  56.008 Mb
  Theoretical instrumented dynamic memory:             1.965 Mb


  .-----------------------.
  |                       |
  |  Preprocessor finish  |
  |                       |
  `-----------------------'


command: 
 /home/r01ken0/Code_Saturne/v2.0.5/cs-2.0/bin/cs_solver --quality --log 0 --param cs_cmd

***************************************************************

                                  (R)
                      Code_Saturne

                      Version 2.0.5


  Copyright (C) 1998-2011 EDF S.A., France

  build Wed 28 Mar 2012 16:59:46 BST
  MPI version 2.1 (Open MPI)


  The Code_Saturne CFD tool  is free software;
  you can redistribute it and/or modify it under the terms
  of the GNU General Public License as published by the
  Free Software Foundation; either version 2 of the License,
  or (at your option) any later version.

  The Code_Saturne CFD tool is distributed in the hope that
  it will be useful, but WITHOUT ANY WARRANTY; without even
  the implied warranty of MERCHANTABILITY or FITNESS FOR A
  PARTICULAR PURPOSE.  See the GNU General Public License
  for more details.

***************************************************************


Local case configuration:

  Date:              Wed 04 Apr 2012 14:02:04 BST
  System:            Linux 2.6.38-13-generic
  Machine:           cops-021076
  Processor:         Intel(R) Xeon(R) CPU           E5504  @ 2.00GHz
  Memory:            12036 MB
  User:              r01ken0 (Kristin Newlands)
  Directory:         /home/r01ken0/simulations/basic_annulus/LES_SMAG/RESU
  MPI ranks:         1

===============================================================

                   CALCULATION PREPARATION
                   =======================


 ===========================================================




 Reading file:        preprocessor_output

 No error detected during the data verification
                              (interface, usini1 and others).

 Finished reading:    preprocessor_output

   Elapsed time for reading preprocessor_output: 0.00857 s

 Extended neighborhood structures definition

 Extended connectivity creation (0.0363 s)
 Number of cells:                                      7000

 ----------------------------------------------------------
 Number of cells + halo cells:                         7000


 ----------------------------------------------------------
 Number of interior faces:                             19320

 ----------------------------------------------------------
 Number of boundary faces:                             3360

 ----------------------------------------------------------

 Histogram of the number of interior faces per cell:

    minimum value =                  4
    maximum value =                  6

      1 : [          4 ;          5 [ =        224
      2 : [          5 ;          6 ] =       6776

 ----------------------------------------------------------

 Renumbering mesh:
 Mesh
     Number of cells:          7000
     Number of interior faces: 19320
     Number of boundary faces: 3360
     Number of vertices:       8736

 Computing geometric quantities (0.0252 s)

 Mesh coordinates:               minimum    and maximum
                       X : -2.5000000e-02  2.5000000e-02
                       Y : -2.5000000e-02  2.5000000e-02
                       Z :  0.0000000e+00  7.5000003e-02

 Computing quality criteria

  Histogram of the interior faces warping:

    minimum value =         0.00000e+00
    maximum value =         1.35203e-01

      1 : [ 0.00000e+00 ; 1.35203e-02 [ =      18916
      2 : [ 1.35203e-02 ; 2.70405e-02 [ =         16
      3 : [ 2.70405e-02 ; 4.05608e-02 [ =         20
      4 : [ 4.05608e-02 ; 5.40811e-02 [ =         16
      5 : [ 5.40811e-02 ; 6.76014e-02 [ =        160
      6 : [ 6.76014e-02 ; 8.11216e-02 [ =         64
      7 : [ 8.11216e-02 ; 9.46419e-02 [ =          4
      8 : [ 9.46419e-02 ; 1.08162e-01 [ =          4
      9 : [ 1.08162e-01 ; 1.21682e-01 [ =         30
     10 : [ 1.21682e-01 ; 1.35203e-01 ] =         90

  Histogram of the boundary faces warping:

    minimum value =         0.00000e+00
    maximum value =         1.36352e-01

      1 : [ 0.00000e+00 ; 1.36352e-02 [ =       3160
      2 : [ 1.36352e-02 ; 2.72704e-02 [ =          8
      3 : [ 2.72704e-02 ; 4.09057e-02 [ =          0
      4 : [ 4.09057e-02 ; 5.45409e-02 [ =          4
      5 : [ 5.45409e-02 ; 6.81761e-02 [ =         92
      6 : [ 6.81761e-02 ; 8.18113e-02 [ =         36
      7 : [ 8.18113e-02 ; 9.54466e-02 [ =          0
      8 : [ 9.54466e-02 ; 1.09082e-01 [ =          0
      9 : [ 1.09082e-01 ; 1.22717e-01 [ =         28
     10 : [ 1.22717e-01 ; 1.36352e-01 ] =         32

  Histogram of the interior faces weighting coefficient:

    minimum value =         5.00000e-01
    maximum value =         5.16246e-01

      1 : [ 5.00000e-01 ; 5.01625e-01 [ =      13720
      2 : [ 5.01625e-01 ; 5.03249e-01 [ =          0
      3 : [ 5.03249e-01 ; 5.04874e-01 [ =          0
      4 : [ 5.04874e-01 ; 5.06498e-01 [ =          0
      5 : [ 5.06498e-01 ; 5.08123e-01 [ =          0
      6 : [ 5.08123e-01 ; 5.09748e-01 [ =          0
      7 : [ 5.09748e-01 ; 5.11372e-01 [ =          0
      8 : [ 5.11372e-01 ; 5.12997e-01 [ =       1400
      9 : [ 5.12997e-01 ; 5.14622e-01 [ =       1750
     10 : [ 5.14622e-01 ; 5.16246e-01 ] =       2450

  Histogram of the interior faces off-centering coefficient:

    minimum value =         1.07000e-06
    maximum value =         2.02829e-02

      1 : [ 1.07000e-06 ; 2.02926e-03 [ =       8067
      2 : [ 2.02926e-03 ; 4.05744e-03 [ =       5546
      3 : [ 4.05744e-03 ; 6.08563e-03 [ =        203
      4 : [ 6.08563e-03 ; 8.11381e-03 [ =       1131
      5 : [ 8.11381e-03 ; 1.01420e-02 [ =        173
      6 : [ 1.01420e-02 ; 1.21702e-02 [ =       1200
      7 : [ 1.21702e-02 ; 1.41984e-02 [ =        934
      8 : [ 1.41984e-02 ; 1.62266e-02 [ =        996
      9 : [ 1.62266e-02 ; 1.82547e-02 [ =        878
     10 : [ 1.82547e-02 ; 2.02829e-02 ] =        192

  Histogram of the interior faces non-orthogonality coefficient (in degrees):

    minimum value =         0.00000e+00
    maximum value =         8.61510e-01

      1 : [ 0.00000e+00 ; 8.61510e-02 [ =       7422
      2 : [ 8.61510e-02 ; 1.72302e-01 [ =       2060
      3 : [ 1.72302e-01 ; 2.58453e-01 [ =       2260
      4 : [ 2.58453e-01 ; 3.44604e-01 [ =       1690
      5 : [ 3.44604e-01 ; 4.30755e-01 [ =       2022
      6 : [ 4.30755e-01 ; 5.16906e-01 [ =       1682
      7 : [ 5.16906e-01 ; 6.03057e-01 [ =       1270
      8 : [ 6.03057e-01 ; 6.89208e-01 [ =        588
      9 : [ 6.89208e-01 ; 7.75359e-01 [ =        188
     10 : [ 7.75359e-01 ; 8.61510e-01 ] =        138

  Histogram of the boundary faces non-orthogonality coefficient (in degrees):

    minimum value =         5.94992e-03
    maximum value =         9.48041e-01

      1 : [ 5.94992e-03 ; 1.00159e-01 [ =        692
      2 : [ 1.00159e-01 ; 1.94368e-01 [ =        436
      3 : [ 1.94368e-01 ; 2.88577e-01 [ =        480
      4 : [ 2.88577e-01 ; 3.82786e-01 [ =        470
      5 : [ 3.82786e-01 ; 4.76996e-01 [ =        416
      6 : [ 4.76996e-01 ; 5.71205e-01 [ =        312
      7 : [ 5.71205e-01 ; 6.65414e-01 [ =        212
      8 : [ 6.65414e-01 ; 7.59623e-01 [ =        246
      9 : [ 7.59623e-01 ; 8.53832e-01 [ =         50
     10 : [ 8.53832e-01 ; 9.48041e-01 ] =         46

  Histogram of cell volumes:

    minimum value =         1.14567e-08
    maximum value =         1.99439e-08

      1 : [ 1.14567e-08 ; 1.23055e-08 [ =       1400
      2 : [ 1.23055e-08 ; 1.31542e-08 [ =          0
      3 : [ 1.31542e-08 ; 1.40029e-08 [ =       1400
      4 : [ 1.40029e-08 ; 1.48516e-08 [ =          0
      5 : [ 1.48516e-08 ; 1.57003e-08 [ =        296
      6 : [ 1.57003e-08 ; 1.65490e-08 [ =       1104
      7 : [ 1.65490e-08 ; 1.73977e-08 [ =          0
      8 : [ 1.73977e-08 ; 1.82464e-08 [ =       1400
      9 : [ 1.82464e-08 ; 1.90952e-08 [ =          0
     10 : [ 1.90952e-08 ; 1.99439e-08 ] =       1400

 Checking the mesh structure coherency:
    Checking the face -> cells connectivity coherency
    Coherency criteria definition
    Coherency verification on coordinates 1
    Coherency verification on coordinates 2
    Coherency verification on coordinates 3
 End of coherency check of the mesh structure.

 --- Main Fortran work arrays:
       longia =       210000 (Number of integers)
       longra =       840000 (Number of reals)
       (4 bytes/integer, 8 bytes/real)

 --- User Fortran work arrays:
       nituse =            0 (Number of integers)
       nrtuse =            0 (Number of reals)

 --- Information on the volumes                              
       Minimum control volume      =        0.114567373E-07
       Maximum control volume      =        0.199438699E-07
       Total volume for the domain =        0.110055506E-03
                                                             
 --- Phase:          1
       ALMAX  =    0.48068E-01 (Characteristic length       )
       ALMAX is the cubic root of the domain volume.

       ALMAX is the length used to initialize the turbulence.

===============================================================

              RUNNING IN VERIFICATION MODE                   
              ============================                   
                                                             
 =========================================================== 




 Extended neighborhood reduced by non-orthogonality
 --------------------------------------------------

 Size of complete cell-cell connectivity:       113792
 Size of filtered cell-cell conectivity:             0
 113792 connections removed, for a ratio of    0 % used


 =========================================================== 




                      END OF CALCULATION                     
                      ==================                     


===============================================================

 Destroying structures and ending computation

Writing of "chr" (EnSight Gold) summary:

  CPU time for meshes:                     0.000
  CPU time for variables:                  0.060

  Elapsed time for meshes:                 0.001
  Elapsed time for variables:              0.014

Checkpoint / restart files summary:

  Number of files read:               0
  Number of files written:            0

  Elapsed time for reading:                0.000
  Elapsed time for writing:                0.000

Calculation time summary:

  User CPU time:              0.280 s
  System CPU time:            0.020 s

  Elapsed time:               0.300 s
  CPU / elapsed time          1.000

Memory use summary:

  Total memory used:                             110.547 MB
  Theoretical instrumented dynamic memory:        10.712 MB

  Fortran work arrays memory use:
   29681        integers needed (maximum reached in CREGEO)
   627089       reals    needed (maximum reached in TESTEL)

   Local maximum work memory requested        7.383 MB
                                  used        5.015 MB